anupparikh

- evaluate different normalization methods and quantify the results with classification methods - show me the list of different cell clusters - what are the top N differentially expressed genes...

include workflow that allows users to evaluate different normalization methods and quantify the results with classification methods.

how do I see the splash screen again

3

as a first time user i want to explore multiple of the predefined workflows scOrange provides, how do I see the welcome screen again without having to close and open...

list of genes and GO analysis per cluster

1

for each defined clusters: * list of N top diff genes * list top N GO terms associated with diff genes * nice ot have overlay with t-sne Anup -...

how do i know the normalization is working well? Are batch effects removed?

filtering simliarly as done for stored data sets from 10x

2

we have a few data sets that use dispersion as a metric to filter genes. Can I do such filtering using the current filter widget? If not is this method...

filter widget change axis min and max

1

Often I see data sets that because of a few outliers has most of the data squeezed. Can I change the axis to log scale? or select the axis range...

filter widget for multi-sample data sets

1

Can I see different color distributions for each sample when I filter a multi-sample data sets?