fqtools
fqtools copied to clipboard
alastair-droop
An efficient FASTQ manipulation suite
Hi during the "./configure" command I got the following error: "config.status: error: cannot find input file: `config.h.in' htslib" I fixed this by also running "autoheader" prior to configure
Following the instructions on the main page: ` git clone https://github.com/alastair-droop/fqtools ` ` cd fqtools/ ` ` git clone https://github.com/samtools/htslib ` ` cd htslib/ ` ` autoheader ` ` autoconf...
Hi, First i would like to thank you for this awesome tool! I recently started using fastq files with mixed uppercase and lowercase. I'm using fqtools 2.3 2019-05-08 (zlib 1.2.8;...
For those running Anaconda/conda to manage your environment, fqtools (and htslib) is available in the bioconda channel. Easy to install: `conda install -c bioconda fqtools htslib`
It appears that the current algorithm for `fqtools type` can get the fastq quality format wrong. Here's a reproducible example: ``` fastq-dump --split-files ERR719681 # Read 300355 spots for ERR719681...
Hi, I have some large fq.gz files, which takes a long time to aln, so I try to split them into small files, it worked. But my script consumes a...
Hi, I am using `fqtools` to validate fastq files for our pipeline. I found the function `fqtools validate` very useful and fast. Just want to know, is there any support...
The test set indicated in the paper appears to have become in accessible, can you confirm if interleaved FASTQ is processed correctly (i.e. checks that adjacent records are from the...
