fqtools
fqtools copied to clipboard
alastair-droop
An efficient FASTQ manipulation suite
``` gcc --version gcc (Homebrew gcc 5.3.0) 5.3.0 ``` ``` In file included from src/fqheader.h:21:0, from src/fqfile.c:14: /usr/include/zlib.h:1324:21: note: expected 'gzFile {aka struct gzFile_s *}' but argument is of type...
``` make tests mkdir -p bin cc -O2 -g -L/bio/linuxbrew/opt/htslib -o./bin/fqtools src/fqprocess_view.o src/fqprocess_head.o src/fqprocess_count.o src/fqprocess_blockview.o src/fqprocess_fasta.o src/fqprocess_basetab.o src/fqprocess_qualtab.o src/fqprocess_lengthtab.o src/fqprocess_type.o src/fqprocess_validate.o src/fqprocess_find.o src/fqprocess_trim.o src/fqprocess_qualmap.o src/fqbuffer.o src/fqfile.o src/fqfsin.o src/fqfsout.o src/fqfileprep.o src/fqparser.o...
fqtools is missing a man page. Or even on for each sub-command. [help2man](https://www.gnu.org/software/help2man/) should get you started.
