Adam Tyson issues

Results 167 issues of


                                            Adam Tyson

Atlas generation refactoring

- [ ] brainglobe/brainglobe-atlasapi#217 - [ ] brainglobe/brainglobe-atlasapi#216 - [ ] Add a git commit hash metadata entry (also dependency version) brainglobe/brainglobe-atlasapi#228 - [ ] brainglobe/brainglobe-atlasapi#218 - [ ] brainglobe/brainglobe-atlasapi#219...

enhancement

atlasgen

Speed up atlas generation (or parallelise) so all scripts can be run automatically in a reasonable time frame (<24 hours). Could also be a slurm array job?

atlasgen

Remove problematic dependencies (e.g. allensdk)

atlasgen

Possibly move quick validation checks into the atlas API

atlasgen

Refactor scripts to simplify code base as much as possible

atlasgen

Fix all broken atlas scripts (based on existing issues or validator failures)

atlasgen

Add checksum for packaged atlas

atlasgen

Add new version of Waxholm rat atlas

https://www.nature.com/articles/s41592-023-02034-3

enhancement

atlasgen

Distinguish between the brainglobe version of the atlas and the "source" version.

It can be confusing that the version of an atlas reported is "our" version, i.e. a version 1.x of an atlas is compatible with v1 of the atlas API. This...

enhancement

atlasgen

Add cuttlefish atlas

https://www.cuttlebase.org/downloads

enhancement

atlasgen

new-atlas