Adam Tyson
Adam Tyson
https://doi.org/10.1007/s12021-023-09623-9
Some anisotropic atlases have been made isotropic and some have not. I think it's worth making them all isotropic for simplicity and to make it easier to develop downstream tools.
Depends on https://github.com/brainglobe/brainglobe-atlasapi/issues/210
See https://github.com/brainglobe/BrainGlobe/issues/26
This is essentially a reply to https://github.com/brainglobe/bg-atlasapi/issues/96, but I'm starting a new issue to track this idea. Sorry for the long post, but interested in your ideas, @brainglobe/maintainers @brainglobe/swc-neuroinformatics @brainglobe/czi_eoss5....
Large arrays (e.g. `atlas._reference`) are only loaded into memory when needed, however they are never deleted. It would be useful to have a method to remove these from memory, e.g....
`bg-atlasapi` should perform better without an internet connection. For example, we could cache the list of available atlases. If a user tries to use one that's not downloaded, then they...
If the atlas name in `last_versions.conf` is capitalised, the atlas API seems to look for a version without the capitalisation (and fails). We can get around this by not capitalising...
This should either be prevented (e.g. check the image size) or the user should be warned.
In the same way as the CLI has the `--n-free-cpus` flag, the plugin should also be able to leave some CPU cores free. This would be useful to help in...