Adam Tyson

Results 167 issues of Adam Tyson

@alessandrofelder's hypothesis - "napari fixtures are now cleverer and fail your tests if you don't clean up your widgets properly" We should look into this and get the tests passing...

bug

I put unknown for the age because the paper doesn't specify (as far as I can tell).

Downloading the atlases can take a long time. In some areas it can seemingly take hours. We should investigate alternatives to improve this, e.g.: - Move to other providers (e.g....

enhancement

Currently there is no standard for how some metadata (e.g. citation strings) are formatted. We should standardise this. For citations, maybe we should just use the DOI if available, and...

enhancement

The atlases we package all have different licences. We should make these more obvious to the user somehow, so they know what they can and can't do with the data....

enhancement

The BrainGlobe atlas metadata is not a standard. We should adopt the [openMINDS_SANDS model](https://github.com/openMetadataInitiative/openMINDS_SANDS). Initially this could be done with one of the atlases with an existing metadata model that...

enhancement

@alessandrofelder's hypothesis - "napari fixtures are now cleverer and fail your tests if you don't clean up your widgets properly" We should look into this and get the tests passing...

bug

`brainglobe-segmentation` is agnostic to the feature being segmented and analysed. It should continue to be possible to analyse any structure, but there's no reason why we can't improve the features...

enhancement

Movement is primarily a Python API as that is effectively the only way to support every possible type of data loading/processing/analysis/visualisation/saving that we would like. The GUI will likely support...

enhancement

@hummusscience reminded me that movement uses the "generic" @neuroinformatics-unit [issue and PR templates](https://github.com/neuroinformatics-unit/.github/tree/main/.github). Now movement is more mature and is gaining more interest, perhaps now is the time to create...

enhancement
good first issue