Lukas Heumos
Lukas Heumos
> Moreover, decoupler contains extensive documentation: single-cell, pseudobulk, spatial and bulk functional analysis, which could be adapted to be used in the book. If you think that more of decoupler's...
> Hi @Zethson! > > The pseudobulking is quite straight forward, [here's the function's documentation](https://decoupler-py.readthedocs.io/en/latest/generated/decoupler.get_pseudobulk.html#decoupler.get_pseudobulk), and an [example vignette of it](https://decoupler-py.readthedocs.io/en/latest/notebooks/pseudobulk.html). If you find it useful I could add it...
https://github.com/scikit-learn-contrib/imbalanced-learn/commit/53f4e4a48f3fe61ca21144b27bb6e230ff5e0d23 already fixed, but we urgently need a release
Yes, but the fix is for @glemaitre to make a release
Is this done by the way? Then we can close it
Dear @kauralasoo , thank you very much! Actually we just had a lot of big efforts of fixing all of these issues and hopefully most are resolved now (we just...
Thank you very much again! We'll see what we can do
Hey @Emiller88 ! It's great to see you here. I kinda remember how things work :) Souporcell is a major tool that we cannot drop. I am not sure how...
Reported upstream https://github.com/scverse/scvi-tools/issues/2782
Relevant PR: https://github.com/theislab/pertpy/pull/502