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nf-core-ize notes

Open edmundmiller opened this issue 2 years ago • 1 comments

Mainly on the containers:

  • Conda declarations are great, we can build singulrity/docker images with wave for that or use the mulled containers.
  • Drop souporcell or add it to bioconda(shouldn't be too bad), containers will get built automagically

edmundmiller avatar Nov 28 '23 21:11 edmundmiller

Hey @Emiller88 ! It's great to see you here. I kinda remember how things work :)

Souporcell is a major tool that we cannot drop. I am not sure how easy it is going to be to add souporcell to bioconda. I fear it might be challenging.

Would you be up for attempting to add it? If not @wxicu might be able to have a stab at it.

Zethson avatar Nov 29 '23 00:11 Zethson