Lukas Heumos comments

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                                            Lukas Heumos

I changed pheno_jaccard_ig to be a csr matrix so it is easier to save and manipulate - before it was a COO matrix which threw some errors.

Hi, could you please provide more details? What issues did you run into?

quick sc.tl.louvain documentation fix

Would you mind filing up a PR for this? Thank you!

Stephen/spaceranger2.0

Thank you! Maybe also relevant for @giovp ?

conda package

@gtca I'd be happy if we could solve this at the hackathon. It will be very beneficial for pipelines since they automatically build containers for Bioconda packages etc. Whether we...

conda package

Huh, since when did that happen? https://anaconda.org/conda-forge/muon I had no idea!

Question: Why was darglint removed in the python cli template?

If I recall correctly darglint slowed down the pre-commit a loooot for bigger packages. Hence, I removed it. I don't think that the sync PR would suggest to remove the...

AnnData can be created with pd.MultiIndex dimension labels without erroring with pandas<2

@arudhir would an awkward array maybe work for such data?

Plotting functions documentation issues

@yotamcons please do!

Unable to import scanpy on CentOS 7 with Python 3.9

@dm8000 does this issue still persist? If yes, please reopen. I'd then also like to see the full `pip list` output

CITE-seq improvements

@ivirshup @gtca should we close this PR since we have muon now?