Torkel Loman

Yes. I should be in Boston by the end of the month. Hopefully we could meet up some time to discuss through what's the best way of setting everything up.

I wanted to have rates dependant on both edge and contabased parameters. The former should be quite easy (will add), but it was not obvious what would be the best...

Update: - MetaGraph Dependency removed. - Initial conditions/parameters for individual compartments/connections are now designated by passing vectors in u0/p. - Parameter can now be specified for individual connections. Parameters specified...

I wonder if there is some good way to define spatial events that can both be used on a continuous space and on a discrete graph? In https://github.com/SciML/Catalyst.jl/pull/558 I try...

Some progress, using `markerstrokewidth=0` does eliminate the black border around the central square, but the square remains: 

Sorry, tried to play around with what was there, but both the large and small things seem to be nodes in some way. What I have discovered is that while...

Hello, I have exactly the same problem. It is on windows 10, and it is on a Hp Omen 15 laptop. Happy to provide more details.

For reference, this: https://github.com/hirschmann/nbfc/issues/1143 and this: https://www.youtube.com/watch?v=OJXzBzPKm6o&ab_channel=ERENBULUT both seems like reports of the same issue.

We support default values for parameters and species: https://docs.sciml.ai/Catalyst/stable/catalyst_functionality/dsl_description/#dsl_description_defaults Next, Setfield.jl could be used to generate a new reaction network with desired default values: ```julia using Catalyst, Setfield rn_old =...

Still, some simple conversions are possible just using Symbolics, e.g. ```julia @syms x y z @variables t X(t) Y(t) String(Symbol(x)) # "x" String(Symbol(t)) # "t" String(Symbol(X)) # "X(t)" ``` so...