Mi Yang

differential expression analysis and GSEA

8

Hello, I was using decoupleR for pathway analysis in single cell. I tried a few lines: ```R msigdb

Linking the single cell tutorial with new vertsion of cell2cell

1

Hello, I would like to know if it's possible to do some interaction heatmap plot and PCoA Euclidean space plot with the new tutorial on ASD with Factor map. I...

Hello, 1) I have a few single cell datasets that have been normalized in different ways. some are log2 TPM, some are raw counts, and some are probably just log2...

Minimum sample size requirement

9

Hello, I would like to know what the minimum requirement in sample size is for bulk RNAseq in order to trust the inferred cell fraction. Do we need at least...

Hello, This is an open thread to share experience. I would like to know what the best inferred cell types are, and what does it depend on. Let's say you...

BITFAM taking way too much time

1

Hello, I was running BITFAM on a subset of 200 cells: BITFAM_res