Mi Yang
Mi Yang
Hello, So I have in total 6 samples from 3 donors. 2 conditions: normal versus treatment. So for each donor, there are 2 samples, one normal, one treated. I want...
Hello, it was a geneset issue ! I used the standard MSigDB 1329 pathways, and I got same result as before.
"Regarding your patient vs sample metadata, you can do two things: i) use the patient id as your sample col (you summarize per patient), ii) you include the patient id...
It would be nice to have the exact version of all modules.
Thank you so much for your quick reply ! In general, what do you think about running BayesPrism a few times with different seeds, and then average the result ?...
Hi Tinyi, I was wondering whether BayesPrism can be used for cell typing in single cell data. For each single cell, we will have an inferred fraction (like we would...
is it possible to provide a script/function to get the embedding taking as input the cell type and the tissue ?