whitematteranalysis

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Undefined the "outdir" in 40th line of bin/wm_vtp2vtk.py

1

Undefined the "outdir" in 40th line of bin/wm_vtp2vtk.py, change as "args.outputDirectory"

tractogram

Consistency in clustering scripts for subject folder creation

7

While the rest of the scripts in the clustering pipeline automatically create a subject folder in the specified directory, the script wm_cluster_remove_outliers.py does not. If you don't know this going...

nsomes

Fan to do items for documentation (thank you!)

3

1. Update all command line commands to use path to SlicerDMRI install 2. Add usage of script to measure from all subjects, 3. Add section for measurement using fiber hierarchy...

ljod

Wrapper script to run the entire clustering pipeline

1

It would be nice to have a single script to run the registration and clustering to produce the atlas, and then a second script that uses the labeled atlas to...

pipitone