Fan to do items for documentation (thank you!)

[ljod]

1. Update all command line commands to use path to SlicerDMRI install
2. Add usage of script to measure from all subjects,
3. Add section for measurement using fiber hierarchy
4. Add new qc script information for after clustering
5. Add outlier removal for individual subject
6. Maybe clarify the difference between the remove outliers script and the remove outliers folder that is generated automatically by the wm_cluster_atlas.py
7. Add example commands for subject clustering
8. Maybe emphasize (bold? italic?) the first sentence under each script, which is the description of the script.
9. Move wm_cluster_subject.py to bin-test directory
10. wm_create_mrml_file.py example code line

[zhangfanmark]

Did 4, 5, 6, 7, 9, 10 8 is not very necessary.

[zhangfanmark]

@ljod consider updating this page: http://projects.iq.harvard.edu/whitematteranalysis/publications

[ljod]

Thanks! I just briefly added your script to measure from all subjects here since we want people to use that and not write their own scripts. At some point the script should handle hierarchy measurement. For now could you please help by putting more detail (example command line etc) into the wiki at the top of this page: https://github.com/SlicerDMRI/whitematteranalysis/wiki/4)-Measurement-from-Clustered-Tracts