whitematteranalysis
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SlicerDMRI
White matter tractography clustering and more...
The ORG atlases in the [ORG-Atlases](https://github.com/SlicerDMRI/ORG-Atlases) repository have received a few updates over time, e g. https://github.com/SlicerDMRI/ORG-Atlases/commit/fb1997318c6e8c2ab727601be509e4a4377777cf Also, the file history in Zenodo shows a few versions: https://zenodo.org/search?page=1&size=20&q=conceptrecid:%222648283%22&sort=-version&all_versions=True According to...
Hi, while I am trying to install whitematteranalysis with 'pip install git+https://github.com/SlicerDMRI/whitematteranalysis.git', there was an error message below: [Anaconda Prompt (miniconda3).txt](https://github.com/SlicerDMRI/whitematteranalysis/files/10917234/Anaconda.Prompt.miniconda3.txt) Would anyone tell me how to solve this error?...
The [tractography parcellation documentation](https://github.com/SlicerDMRI/whitematteranalysis/blob/6d93b6452b32ebedbee29674766abfe752dd1d04/doc/subject-specific-tractography-parcellation.md) should be refactored so that the appropriate way of calling the modules at least in Linux are also included. Related to PR #127.
The purpose of the script https://github.com/SlicerDMRI/whitematteranalysis/blob/6d93b6452b32ebedbee29674766abfe752dd1d04/slicer/installWMA.sh is not documented anywhere. Is it useful/relevant so that WMA can effectively call Slicer modules? Also, it contains hard-coded - The `INSTALLFOLDER` is certainly...
Hi！ I replaced Python 3.7 with Python 3.8 as you said. I still get the same error. 
Hi! There are FA, trace etc for each tensor in diffusion measurements. However in many articles with two-tensor UKF tractography application it is not specified which of two tensor's data...
## Problem When running a nonrigid transform using `wm_register_to_atlas_new.py`, it crashes as soon as it tries to save the results of its first iteration with the error: `TypeError: 'float' object...
I've been having some trouble running the `wm_quality_control_tractography.py` script. I've been attempting to run the scipt in a folder with multiple vtk files using the command: `wm_quality_control_tractography.py ./ ./QC/InputTractography/` The...
When I run this function with vtk>=9.0.1, I got the error "Segmentation fault (core dumped)". After I downgraded my vtk to 8.1.2, the problem was solved.
I'm interested in running WMA on a compute cluster. I was wondering whether you have a Dockerfile that includes the installation of Slicer, Slicer dMRI, WMA and the ORG-Atlases? If...
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White matter tractography clustering and more...