assemblyqc

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What organisms is this designed for?

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### Description of feature It is unclear if this pipeline will work on any organism assembly? Is it haploid genomes only? Is it especially for bacteria?

tseemann

Can we automatically label sequences for PLOTSR?

1

### Description of feature Currently, PLOTSR takes the first least common number of sequences from each assembly's labels file and labels them sequentially as Chr1, Chr2, etc. Can we perform...

GallVp

[UPDATE] GITHUB/NCBI/FCS -> 0.5.4

1

- https://github.com/ncbi/fcs - ./modules/nf-core/fcs/fcsadaptor/main.nf - This will have to wait till the next release, see https://github.com/ncbi/fcs/issues/90

GallVp

- https://github.com/python/cpython - ./modules/gallvp/custom/restoregffids/main.nf - ./modules/pfr/custom/relabelfasta/main.nf

GallVp

- https://github.com/oushujun/EDTA - ./modules/gallvp/ltrharvest/main.nf

GallVp

- https://github.com/shenwei356/seqkit

GallVp

- https://github.com/ncbi/sra-tools

GallVp

### Description of feature - https://blobtoolkit.genomehubs.org/about/

GallVp

From @rosscrowhurst A suggestion for BUSCO summary report - maybe consider putting in javascript with check boxes to show/hide rows so that if you only want (say) CK6901M, DH and...

GallVp

GallVp