MuDataSeurat

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Hello, author. I had an error converting the seruat v5 object to h5ad. ``MuDataSeurat::WriteH5AD(a, "a.h5ad",assay="RNA")`` `Error in WriteH5ADHelper(object, assay, h5, global = TRUE): no slot of name "meta.features"for this object...

FlowerPurr

HDF5-API Errors: error #000: H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

4

Hi, I'm trying to convert mudata to Seurat object. I'm getting following error while using ReadH5MU(): seurat

rosanababu

Empty tables and nullable

3

Should make it possible to read more files out there as in #14

gtca

WriteH5MU fails

4

Hi, thanks for working on interoperability between seurat and mudata! I am failing to save the [seurat object ](https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seurat) offered in this [tutorial](https://satijalab.org/seurat/articles/multimodal_reference_mapping.html#computing-an-spca-transformation-1) ``` reference sessionInfo() R version 4.1.2 (2021-11-01)...

bio-la

I've tested the patch but I still see the same error. Strangely, the error disappears upon forcing my ADT matrix to a sparse matrix using `Seurat::as.sparse`. Now I can load my `mudata` file.

5

> I've tested the patch but I still see the same error. Strangely, the error disappears upon forcing my ADT matrix to a sparse matrix using `Seurat::as.sparse`. Now I can...

bio-la

I pulled down two h5ad files from https://developmental.cellatlas.io/fetal-bone-marrow. (1) Human fetal BM 10x dataset and (2) Human fetal BM Down syndrome 10x dataset) The Down syndrome data loads fine using...

maallen3