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A pipeline to detect chimeric transcripts derived from genes and transposable elements.

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## Example Data Mode 1 Really minor changes regarding this section. The `#One-line` command is correct, however the `#Multi-line` command has files that are not present. The --te parameter has...

As mentioned in #19 , I got a warning message when calculating transcripts expression. ``` Unable to calculate gene expression! Including all transcripts with at least one read to the...

Hi, Thank you for providing ChimeraTE, which is a very wonderful software that has been very helpful for my recent work. I have some questions while using it. 1) How...