Nilad

Same kind of error with Enteroroccus clade # command ``` singularity exec -B /media/:/media/ ~/Bureau/Tools/Bacsort/Bacsort.simg combine_distance_matrices.py tree/fastani.phylip tree/mash.phylip > tree/distances.phylip && singularity exec -B /media/:/media/ ~/Bureau/Tools/Bacsort/Bacsort.simg bionj_tree.R tree/distances.phylip tree/tree.newick ```...

The tool is preconfigured for bacteria kingdom. I suggest you to download this bash script [https://github.com/rrwick/Bacsort/blob/master/scripts/download_genomes.sh](url) and replace `bacteria` term by `archea` and continue to use the next steps of...

Same Issue

Hi Ryan, I have under my elbow some runs on SQK-LSK109 with E.Coli and K.pneumoniae species. In same way, theses data can maybe shared for you training model. Best,

@jrhendrix No dataset mentionned above are freely available. It can be available in collaboration work.

Get Same issue. Code : 00000 ``` itf = ITF(u'00000', writer=ImageWriter()) itf itf.build() ['11001100110011001111100000111110000011001100110011111000001111100000110011001100111110000011111000001100111110011'] fullname = itf.save('itf_barcode') ``` Image:  We can see in the 3 last bar, that the...

@WhyNotHugo Probably yes, but the `guardbars` option is not available in `itf.py`

My situation is that i use roary in a singularity container for web usage. And, by default, the output files are produced at the location of the singularity command line...

:up: This feature !

I have exactly the same problem. @tseemann @jackkamm The snippy call on a strain (let's call it "strain_1") dont found any SNP at a given a position (vcf, tab, all...