downloading archaea genomes from refseq

[ganiatgithub]

Hi,

When I run: download_genomes.sh "Methanosarcina"

It gives me: find: refseq/bacteria: No such file or directory

Any tips on downloading from an archaeal genus?

Many thanks!

Gaofeng

[Nilad]

The tool is preconfigured for bacteria kingdom.

I suggest you to download this bash script https://github.com/rrwick/Bacsort/blob/master/scripts/download_genomes.sh and replace bacteria term by archea and continue to use the next steps of this tool.