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Published 20 hours ago • verified publisher icon rrwick

LSK-109 data

Open jsemple19 opened this issue 5 years ago • 5 comments

Hi Ryan,

We have a couple of flow cells worth of reads with LSK-109 kit, and would be happy to share them with you. They are from the C. elegans genome. Let me know if you are still interested. Best,

Jenny

jsemple19 avatar Apr 24 '19 06:04 jsemple19

Hi Ryan,

I have under my elbow some runs on SQK-LSK109 with E.Coli and K.pneumoniae species. In same way, theses data can maybe shared for you training model.

Best,

Nilad avatar May 16 '19 09:05 Nilad

Likewise - we have 11 flowcells worth of data here - LSK109 barcoded 1-24

SRooke avatar Jul 01 '19 11:07 SRooke

Hi, I would also be very interested in a model trained on barcoded LSK109 data! Please let me know if such a model exists. Best,

jrhendrix avatar Mar 06 '22 14:03 jrhendrix

Hi @jsemple19 @Nilad @SRooke, I am looking for a complete LSK109 data set in order to train an LSK109 model for Deepbinner. I have the computational resources and know-how, but I do not have a complete data set. Are any of datasets mentioned in the previous comments publicly available or are you able to share?

jrhendrix avatar Jul 11 '22 14:07 jrhendrix

@jrhendrix No dataset mentionned above are freely available. It can be available in collaboration work.

Nilad avatar Jul 13 '22 12:07 Nilad