python-neo

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Deprecation in pq.Quantity of the copy argument

3

Spotted today on CIs in MNE-Python: https://github.com/mne-tools/mne-python/actions/runs/10577451925/job/29305474492?pr=12815#step:17:5232 ``` neo/io/proxyobjects.py:296: in load anasig = AnalogSignal( neo/core/analogsignal.py:202: in __new__ obj = pq.Quantity(signal, units=units, dtype=dtype, copy=copy).view(cls) quantities/quantity.py:120: in __new__ warnings.warn(("The 'copy' argument in...

mscheltienne

Fix for #1530 [IgorIO and missing "xUnits"]

2

"xUnits" is only used in Versions 1, 2, 3 of .pxp files; Version 5 uses "dimUnits" - see https://github.com/AFM-analysis/igor2/blob/43fccf51714661fb96372e8119c59e17ce01f683/igor2/binarywave.py#L501

apdavison

**Describe the bug** Loading blocks from a .pxp file with IgorIO results in a KeyError. **To Reproduce** The error occurs with files from [this EBRAINS dataset](https://search.kg.ebrains.eu/instances/f25ec9c9-2348-4a62-a6af-907d389f263d). ``` from neo import...

apdavison

Add NeuronexusRawIO/IO

5

Fixes #1296. I'll try to work on this a bit in my free time. Will switch off draft when ready for review. Also should help for [neuroconv](https://github.com/catalystneuro/neuroconv/issues/702) * [x] Add...

zm711

Why is the event channels header dtype is in bytes?

2

So here: ``` _event_channel_dtype = [ ("name", "U64"), ("id", "U64"), ("type", "S5"),

h-mayorquin

Consumes a huge amount of memory during processing

6

I want to read data from a dat file using RawBinarySignalIO and plot the data. When I ran the program below, it consumed more than 32GB of memory for a...

mousphere

Fix electrode selection in Axona raw recording

6

I'm proposing this PR to fix #1454 @zm711

letiziasignorelli

read_neuralynx_sorting difficulties

4

**Describe the bug** When I use spikeinterface se.read_neuralynx_sorting to create a sorting and then plot the rasters there are more segments than expected **To Reproduce** Run the attached script. When...

HesTheMan

read_spikegadgets broken for neuropixel recordings

15

Hi, The read_spikegadgets from spikeinterface was working with neuropixel probes with this committ 83a84b2 but now it is broken. ``` File "C:\Users\SciencePerson\miniforge3\envs\spikesorting\lib\site-packages\IPython\core\interactiveshell.py", line 3550, in run_code exec(code_obj, self.user_global_ns, self.user_ns) File...

RobertoDF

Improve RawIO Documentation

2

**Which page is the problem on?** RawIO stuff **What is the problem?** We have a good object model for the Neo Hierarchy (in my opinion), but what the rawio terms...

zm711