python-neo

python-neo copied to clipboard

**Describe the bug** An object with an array_annotation of dtype=datetime.datetime can not be saved as this raises an error in nixio. `_nixio_write_property` needs to be adjusted to convert datetime objects...

JuliaSprenger

`OpenEphysRawIO` header parse is slow

4

Hey, I have ecephys data from the Tye lab in legacy `OpenEphys` format (.continuous files) and I'm using `OpenEphysRecordingInterface` from `neuroconv` to write the data to NWB (which uses `OpenEphysLegacyRecordingExtractor`...

weiglszonja

[NWBIO] Write AnalogSignals as ElectricalSeries

2

**Is your feature request related to a problem? Please describe.** Currently only icephys series types or TimeSeries are supported when writing nwb files. However, some analysis tools, e.g. [spikeinterface](https://github.com/SpikeInterface/spikeinterface/blob/03d066e15ae07aa0c37aefdfecf1ed8281f7a8de/spikeinterface/extractors/nwbextractors.py#L484) are...

JuliaSprenger

An OSError about header when importing neuralynx data

21

**Describe the bug** I was trying to import neuralynx data into python using neo. But, I got an OSError. This is a screenshot of the error. ![Screen Shot 2022-11-27 at...

redagavin

Some IOs still use the `all-in-one` mode, which according to the BaseIO should not exist (anymore).

JuliaSprenger

Neuroscope: fix scale of signals.

2

Need to multiply not divide by 1000 for mV scale.

PeterNSteinmetz

I've been working on this in my free time, but figured I would just open the PR for it. I've about got the core portion of Neo switched over to...

zm711

Fixes #278 Here is a starting draft for making a units module. @apdavison is this roughly what you had in mind? Or were you thinking of something else? I'll clean...

zm711

Adding support for NVT files in neuralynxrawio

1

Is there any plan to add support for Neuralynx NVT files in the near future? If there's no one currently working on it, I could try to add it in...

alyxmi

Make a policy for deprecating IOs

2

KwikIO for the Kwik format of stuff constantly throws warnings (I believe it is meant for python < 3.7). We should have a policy for either removing from tests or...

zm711