python-neo

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**Is your feature request related to a problem? Please describe.** For whatever reason, the timestamps in `timestamps.npy` of an event stream in an OpenEphys >=0.6 binary dataset can become corrupt,...

johnmbarrett

Multiple issues with gettings durations for events from Open Ephys binary files

1

**Describe the bug** `OpenEphysBinaryRawIO._parse_header` refuses to extract durations when the number of rising edges detected exceeds the number of falling edges, even though there is enough information to compute almost...

johnmbarrett

[SpikeGLX] Support imDatPrb_type 1100 (Ultra variant)

2

Stemming from https://github.com/NeurodataWithoutBorders/nwb-guide/issues/713 A user with a SpikeGLX `.meta` file contains the field `imDatPrb_type=1100`, which has been unseen before and triggers an error at line https://github.com/NeuralEnsemble/python-neo/blob/883b29a28575b23f04189aca49a4a562b606a685/neo/rawio/spikeglxrawio.py#L470 You can replicate this...

CodyCBakerPhD

BiocamIO: support sparse event based recordings

9

This PR includes some code extracted from the [3Brain documentation](https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/master/biocam/documentation_brw_4.x_bxr_3.x_bcmp_1.x_in_brainwave_5.x_v1.1.3.pdf) and added with kind permission by 3Brain. I wrote: > I am contributing to the inclusion of reading recordings from...

mahlzahn

Add support for Blackrock NSx files with per-sample PTP nanosecond timestamps

5

Fixes #1332 Blackrock's newest signal acquisition devices use nanosecond timestamps from clocks synchronized with PTP. This allows synchronization between devices that might have slightly different clock rates and not capture...

cboulay

Protect against corrupted channels in legacy openephys.

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@weiglszonja : Here this raise an error when a file is corrupted (bad timestamp)

samuelgarcia

Better error message upon failure in loading `OpenEphysBinary` folder

5

Something I've been wanting to do for a long time :)

alejoe91

Undocumented segments in Blackrock nev data cause downstream AssertionError

12

**Problem** I have encountered a problem related to undocumented segments in Blackrock NEV files. In the file blackrockrawio.py, function ____get_event_segment_ids, the code identifies 2 undocumented segments within NEV data and...

daltondm

Electrode selection in Axona raw recording

10

I'm trying to convert electrophysiological data from Axona to NWB using the code from the Neuroconv [https://github.com/catalystneuro/neuroconv](url). I'm using neuroconv version 0.4.9 with Python 3.9 on Windows 11 in a...

letiziasignorelli

Support for Neuronexus (.XDAT) files

16

Hi. I am new to analyzing ephys data, and our lab currently uses allego neuronexus files (.xdat). In wanting to use spike interface, we reached out to see if there...

dana-o