cellpose
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MouseLand
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
The saved file of the model is as follows: 
**Describe the bug** In the new cellpose GUI, there doesn't seem to be a "model zoo" section where I can choose between pre-built (non-custom) models. As a result, even though...
**Describe the bug** I have a [script](https://github.com/natelharrison/cell-segmentation-ml-scripts/blob/main/cellpose_run.py) for running Cellpose and after adding options to use the DenoiseModel or CellposeDenoiseModel, the output for a 3D image is flattened across one...
Using the new cellpose denoise cyto3. It seems while running through the model.eval. my machine is using up 15GB RAM. My images are 2048*2048 pixels. They're just not that big....
[BUG] Cellpose 3.0.7 does not remember that turning off auto-adjust saturation during image training
**Describe the bug** Cellpose 3.0.7 does not remember that turning off auto-adjust saturation during image training. **To Reproduce** Steps to reproduce the behavior: 1. deactivate auto-adjust saturation 2. perform training...
**Is your feature request related to a problem? Please describe.** I am trying to use some existing data to create my own model (using human-in-the-loop feature), but the data we...
**Install problem** I installed CUDA 11.8.0 and PyTorch 11.8. TORCH CUDA version installed and working. The Use GPU option is enabled on the GUI. Yet, GPU remains idle (i.e. 0%)...
Dear Developers, I am encountering an issue while attempting to utilize the GUI using the command-line command `python -m cellpose` I successfully installed both cellpose and cellpose[gui] using pip. However,...
**Install problem** I am getting an error message when trying to run a script on our A100 linux nodes. The GPUs have been MIGed. I ran "export CUDA_VISIBLE_DEVICES='MIG-849e08aa-b1bd-5744-babc-e89e41b926b4'" to specify...
I've been using Cellpose 2.2.2 to segment rather large images with tens of thousands of cells. Now I upgraded to Cellpose 3.0.7 to try out the new denoising/deblurring features, however,...
