Zika-RNAseq-Pipeline
Zika-RNAseq-Pipeline copied to clipboard
MaayanLab
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Bumps [openpyxl](https://openpyxl.readthedocs.io) from 2.2.5 to 2.4.2. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.16 to 1.26.5. Release notes Sourced from urllib3's releases. 1.26.5 :warning: IMPORTANT: urllib3 v2.0 will drop support for Python 2: Read more in the v2.0 Roadmap Fixed...
Hi! I used the advice from the reply to the similar issue (ref below) and found IP address. But if I try it I get an error:"Unable to connect. Firefox...
Hi again, As I am trying to run the [Zika.ipynb](https://github.com/MaayanLab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb), I noticed that the link > `ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByStudy/sra/SRP/SRP070/SRP070895/` is either deprecated or not accessible to everyone. By following the parent directory...
Hi, I am trying to run the [Zika.ipynb](https://github.com/MaayanLab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb). `GENOMEDIR` is defined, >`os.environ['GENOMEDIR'] = 'genomes/Homo_sapiens/UCSC/hg19'`)  What files is the minimal set of reference files (eg, `fasta`, `fai`, `dict`) which should...
Hello, I've followed every instruction as it is but in the end I am not able to see any result on the browser. I have pulled the docker successfully. I...
