Zika-RNAseq-Pipeline
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Where is `os.environ['GENOMEDIR'] = 'genomes/Homo_sapiens/UCSC/hg19'` sourced from?
Hi,
I am trying to run the Zika.ipynb.
GENOMEDIR
is defined,
os.environ['GENOMEDIR'] = 'genomes/Homo_sapiens/UCSC/hg19'
)
What files is the minimal set of reference files (eg, fasta
, fai
, dict
) which should be included in the directory? I would like to use the reference resource for UCSC/hg19
from iGenomes but not sure how many and which files are required.
Apologies if this is described in the docs and I have missed it.
Thanks in advance, Christina