Jacques Dainat
Excellent, thank you for the feedback @percyfal !
This can be dangerous, `Derives_from` do not have the same meaning as "Parent". We should inform mirbase.org to be more compliant with the official specification: https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md Personnaly I'm not sure...
Right, `dangerous` was a bit strong ^^. I agree a novice will not play with that parameter. I mainly wanted to warn that trying to be compliant with all sort...
It also address the https://github.com/thackl/proovframe/pull/10 PR
What version of BUSCO do you use. Try busco 3.0.2, it is working with that one for sure
To call it (at least with that version) on conda, it is something like "run_busco.pl" and not "busco" Did you try the pipeline? it should work
I have it installed on both versions. I don't remember any issue. Did you install it in a fresh new environnement? You might have confilct with other tools you installed...
Interesting, I don't know the best way to deal with that.
In that case you should better use the container. Or create your own env based on the one from GAAS wrihout R-base, I guess this is the dependency that is...