MERINGUE

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Parralel Computing #2

1

Dear JEFworks team, Thank you very much for the great package. As described in https://github.com/JEFworks-Lab/MERINGUE/issues/15 , the first part of the pipeline to detect spatial patterns can be parallelized. Since...

Acaro12

Can't install MERINGUE in WSL2

3

dear @JEFworks and @bmill3r : I tried to install MERINGUE, though I installed lapack.so and blas.so, I still failed to install MERINGUE. So now I don't know what to do,...

GODCALLMEGOD

correlation between genes

1

Dear author, Thank you for providing these fantastic tools. I am currently seeking assistance with utilizing the tool to calculate the correlation between genes using my VIsium data. It appears...

JihyunKiminGithub

Unable to rotate pictures for my spatial transcriptomics data

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Hello, I am using human lymph node data from 10x visium spatial transcriptomics data set. Also, I am little new to coding. I was trying to understand the package STdeconvolve...

apsuresh

Correlation between genes

2

Hello, I heard that Meringue was used to compute the correlation between genes in the Visium 10XGenomics public datasets posted on their website (https://www.10xgenomics.com/resources/datasets). Is that right? Is that information...

maiskovich

Hi, Wonderful job! I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how [Shinycell](https://github.com/SGDDNB/ShinyCell#Overview) handles...

howtofindme