Hamish Tomlinson

Thanks for this suggestion! This has been fixed in https://github.com/deepmind/alphafold/releases/tag/v2.2.4

Thanks for this PR! These suggestions have been included in https://github.com/deepmind/alphafold/releases/tag/v2.2.4

Hi @YiningWang2 thanks for the question. You will be able to compute this from the AFDB google cloud data. Metadata, including pLDDT fractions, can be queried with bigquery. Otherwise, one...

Hi thanks for raising this. We will remove the jax dependency from this output and push an update.

Hi this was addressed in https://github.com/deepmind/alphafold/commit/91ac85ac72e1c217cf2d42fae200082c5c46a26f. Thanks for raising this.

Hi! Is there a chance that your kernel died after running cells 1 and 2? If so, and it restarted, this would mean that cells 1 and 2 would need...

Hi! Are you using the docker image?

These environment variables should be helpful: https://github.com/deepmind/alphafold/blob/main/docker/run_docker.py#L245 The reason for my question was just to check these are being set. It should be possible to run without the Docker image,...

Hi -- was this in colabfold or the colab in this repository? On Wed, 14 Jun 2023 at 16:00, lmvl01 ***@***.***> wrote: > AttributeError: module 'collections' has no attribute 'Iterable'...

Hi! Has the code been adapted at all? There is no 2.3.4 tag.