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Published 20 hours ago • verified publisher icon google-deepmind

About Alphafold DB

Open YiningWang2 opened this issue 2 years ago • 1 comments

YiningWang2 avatar Apr 24 '22 07:04 YiningWang2

Hi, i am quite interested in AlphaDB, i wondering where can i download the plddt score of the whole human proteomes. Thanks a lot.

YiningWang2 avatar Apr 24 '22 07:04 YiningWang2

Hi @YiningWang2 thanks for the question. You will be able to compute this from the AFDB google cloud data. Metadata, including pLDDT fractions, can be queried with bigquery. Otherwise, one could download the data for the whole human proteome using the tax ID 9606 and use the confidence files. Instructions for using the cloud datasets are documented in https://github.com/deepmind/alphafold/tree/main/afdb. Thanks!

Htomlinson14 avatar Jan 16 '23 15:01 Htomlinson14