Hamish Tomlinson

Hi thanks for this! This has now been fixed in https://github.com/deepmind/alphafold/releases/tag/v2.2.4.

Did you execute cell 3 before cell 4? This is where model_type_to_use is defined. Thanks!

Hi yes its possible to get different results as they are different environments and the model is stochastic. Could you please provide full reproducibility details about your run? Also, have...

Hi can you please report the machine (GPU) you are using and also the iptm+ptm results for each of these runs?

You may also wish to follow the discussions on https://github.com/deepmind/alphafold/issues/597

Hi - thanks very much for providing these values. I can't say exactly what is happening here but a few things to consider: * The dictionary keys say e.g. "model_1_ptm_pred_0"...

Ok cool. I think in this case the second and third bullets above are most relevant, particularly the comments on the potential impact of newer templates. Thanks!

Hi thanks for raising this. Can you please provide more details e.g. about your machine, docker version etc?

Hi thanks for the question. I haven't been able to reproduce this error. Are you using the same Dockerfile in the latest version release or have you made some changes?

Hi thanks for raising. What version of docker are you using and on what type of machine?