ArchR

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addGroupCoverage kills the session

1

It's more than 5 times now that addGroupCoverage, it kills the session and I get this , ERROR The previous R session terminated abnormally; packageVersion is 1.0.2 How to solve...

Aya-Balbaa

issue with integrating scRNAseq with ArchR using 'addGeneIntegrationMatrix( )

3

My error comes from step 8.1 from 'Full Manual', specifically I am getting the error **

BartBryant

Error: invalid subscript in addGeneExpressionMatrix()

1

Hello, Thank you for creating this tool, it is extremely useful. And, congratulations on your recent publication. I keep getting this error when I try to add gene expression from...

YesseniaCQ

getFootprints

2

seTSS

uhnxuxi

Installing the package

2

This is an issue template made by the developers of ArchR. You MUST follow these instructions. Questions related to how to use ArchR or requests for new features should be...

jeromejh

Error splitting archr project

1

Hi, I have an ArchR project where I have six samples of two different conditions, but I'm trying to split the project dividing it by condition. My idea is to...

drighelli

Error with addIterativeLSI

1

Hi all! I have a problem with the LSI function, I get the following error. I want to analyze single cell( Atac-seq) data for two mouse samples. I figure out...

eelishh

Matrix 1.6-2 breaking irlba

7

I got an error while running `addDoubletScores`: `` It seems that changes in [Matrix 1.6-2.](https://github.com/bwlewis/irlba/issues/70) are breaking `irlba`, and `ArchR` as a consequence. Not a bug of arcR, but it...

frac2738

ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption

3

Hi,Dear software creator, I encountered two types of errors while using createArrowFiles.But,I used the tutorial dataset, and everything worked fine.And than, I have searched some similar issue discussions, but none...

HaixJiang

Rstudio crashing with addGeneIntegrationMatrix() and addToArrow = TRUE when accessing GeneIntegrationMatrix from temp files

1

**Attach your log file** [ArchR-addGeneIntegrationMatrix-309a7ba7d4af-Date-2024-01-11_Time-01-44-22.log](https://github.com/GreenleafLab/ArchR/files/13906108/ArchR-addGeneIntegrationMatrix-309a7ba7d4af-Date-2024-01-11_Time-01-44-22.log) **Describe the bug** RStudio aborts and hits a fatal error when running addGeneIntegrationMatrix() when ArchR is writing the GeneIntegrationMatrix to the arrow files. I can...

dgagler