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ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption
Hi,Dear software creator, I encountered two types of errors while using createArrowFiles.But,I used the tutorial dataset, and everything worked fine.And than, I have searched some similar issue discussions, but none of them have resolved my problem.Eg:createArrowFiles has encountered an error, checking if any ArrowFiles completed #1275 so on.
ArrowFiles <- createArrowFiles(
inputFiles = inputFiles,
sampleNames = "jhxscATAC",
geneAnnotation = geneAnnotation,
genomeAnnotation = genomeAnnotation,
minTSS = 4, #Dont set this too high because you can always increase later
minFrags = 1000,
filterTSS = 0.5,
filterFrags = 100,
addTileMat = TRUE,
force = TRUE,
addGeneScoreMat = TRUE,
nChunk = 2,
subThreading = TRUE,
cleanTmp = TRUE,
threads = 1
)
Describe the bug, threads = 16
ERROR Found in .fastTSSCounts for
createArrowFiles has encountered an error, checking if any ArrowFiles completed..
ArchR-createArrows-162e37760c4f2-Date-2024-01-13_Time-21-45-08.689397.log
I modified the threads = 1
2024-01-13 23:54:20.706903 : (jhxscATAC : 1 of 1) Reading TabixFile 16 Percent, 86.588 mins elapsed.
*** Error in `/home/JHX68/anaconda3/envs/R4/lib/R/bin/exec/R': double free or co rruption (!prev): 0x0000562139e9a790 ***
Attach your log file ArchR has a built-in logging functionality for all complex functions. You MUST attach your log file (indicated in the console output) to this issue. Just drag and drop it here. ArchR-createArrows-162e312890945-Date-2024-01-13_Time-22-27-42.934857.log ArchR-createArrows-20c9c6039b4b5-Date-2024-01-13_Time-09-17-40.620121.log