ArchR

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kant

HDF5 error

7

plotGroups(proj,colorBy="GeneIntegrationMatrix", name="PLP1", groupBy="Clusters", plotAs="violin",threads=1) Error: Getting ImputeWeights No imputeWeights found, returning NULL 2022-10-14 19:54:41 : Getting Matrix Values... 1 2 3 4 5 6 7 8 9 10

AnjaliC4

addReproduciblePeakSet error

4

hello, I meet an error when i run addReproduciblePeakSet, and i have not idea to resolve it. Can you get me some suggest? proj sessionInfo() R version 4.2.1 (2022-06-23) Platform:...

chen-zhan

`getTestProject`: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘replaceCOLS’ for signature ‘"DataFrame"’

21

**Attach your log file** None generated. **Describe the bug** Error message produced when running `getTestProject` function. **To Reproduce** ```R library(ArchR) proj

bschilder

AddModuleScore with Peaks

26

**Unable to generate Module Score with peak data** I am using ArchR/release 1.0.3. which should have the most updated version of AddModuleScore... to my knowledge. ``` gr

waltno

Dev module score

1

Addressing https://github.com/GreenleafLab/ArchR/issues/1631

rcorces

Harmony installation has changed

1

Harmony is no longer recommended to be installed with devtools and is now available in CRAN. We need to update the `installExtraPackages()` function and the `DESCRIPTION` file for ArchR to...

rcorces

Paired Multiome samples

1

### Discussed in https://github.com/GreenleafLab/ArchR/discussions/2141 Originally posted by **icenzano** March 28, 2024 Hello everyone! I am starting with multi-omics analysis and I need to analyze our three 10x multi-omics datasets with...

icenzano

Continuing through after error ggplot for Fragment Size Distribution

6

Continuing through after error ggplot for Fragment Size Distribution Hey team! First of all thank you for everything that you do and the package! @rcorces @jgranja24 @jeffmgranja **Describe the bug**...

hira-anis

peakAnnoEnrichment fxn gives error "CRsparse_colSums" not resolved from current namespace (Matrix)

8

running ArchR up to Ch12 and I get an error message with the peakAnnoEnrichment ( ) of note, I am using SeuratObject_4.1.3 and Seurat_4.3.0 as previous tutorial required these versions...

BartBryant