Error with addIterativeLSI

[eelishh]

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Hi all!

I have a problem with the LSI function, I get the following error. I want to analyze single cell( Atac-seq) data for two mouse samples. I figure out that running an each sample separately it works, but when I put them together I got the error. This is my log file:

Attach my log file ArchR-addIterativeLSI-3225e98f2e7-Date-2024-01-16_Time-16-16-09.693821.log

The bug

proj2 <- addIterativeLSI(

• ArchRProj = proj2,
• useMatrix = "TileMatrix",
• name = "IterativeLSI",
• iterations = 1,
• clusterParams = list(

• resolution =0.2, 
  

• sampleCells = 10000,
  

• #maxClusters = NULL,
  

• n.start = 10
  

• ),
• outlierQuantiles = NULL,
• dimsToUse = 1:30) Checking Inputs... ArchR logging to : ArchRLogs/ArchR-addIterativeLSI-3225e98f2e7-Date-2024-01-16_Time-16-16-09.693821.log If there is an issue, please report to github with logFile! 2024-01-16 16:16:09.871172 : Computing Total Across All Features, 0.001 mins elapsed. Error in FUN(X[[i]], ...) : rowSums lengths do not match in ArrowFiles for a seqname!

Thank you for any help in advance!