flextaxd
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FOI-Bioinformatics
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
I'm attempting to follow along with [this part of the tutorial/wiki](https://github.com/FOI-Bioinformatics/flextaxd/wiki/8e.-Walkthrough-16S-GTDB-kraken2-database), to get a better understanding of how to create my own custom DB. Things are okay until I get...
Hi Flextaxd team, Great tool! I am attempting building a kraken2 database with archaea and bacteria from GTDB and viral, plasmid, uniVec_Core from NCBI. I have downloaded library.fna via kraken2...
Implement an MPI style output format planned for the next reliease v0.4.3
How to deal with input trees with no clear rank order or given levels (QIIME includes p__, s__ etc) but a standard CanSNPer tree does not (for example). Should FlexTaxD...
A few examples of genomes containing "-" in the name are lost in the kraken2 database build.
Hi guys, Thank you for developing this tool. I have one question. I downloaded genomes with all types of assembly from NBCI (Refseq). When created the flextaxd database, I noticed...
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FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )