ASAP
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DeplanckeLab
ASAP : Automated Single-cell Analysis Pipeline
Some projects get stuck in the "Archived / Unarchiving" state, as reported by different users: "Projects seem stuck with the “Unarchiving project...” message for hours. On the projects page, from...
This is slowly becoming the central panel for most projects. We need to enhance it. As currently it's not easy enough to color by gene, metadta, etc.... Probably we could...
We need to: - Test the existing model on the server - Create the UI to use it (probably in the Visualization pane? Maybe as a separate task? - Adapt...
In the list of public/private projects, it would be useful to know the pipeline used (bulk or single-cell) Could we make this list more appealing visually? Similar to https://cellxgene.cziscience.com/datasets maybe?...
We should update the pipeline to make it even more bulk-specific: - Remove the HVG step, because it's a single-cell-only step - Scaling: The scaling method is called "Seurat", but...
We cannot annotate the Category, cluster 2 in https://asap.epfl.ch/projects/8jaw4y
Dans Visualization / Annotation, la vue avec les marker genes et les annotation devraient être compressée. Par example dans https://asap.epfl.ch/projects/8jaw4y Je vois  On pourrait mettre Odd+ Tin- par example...
When we validate to run a method, it stays on the wheel for quite a while, before the card is generated.
It would be cool to be able to create a new visualization from any metadata? For e.g., I have a public project, which already has a UMAP. I've re-created the...
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ASAP : Automated Single-cell Analysis Pipeline