AliceJoubert

Results 38 comments of AliceJoubert

Add FMAP conversion capability for ADNI

Thanks @tharpm95 and @NicolasGensollen ! Looks good to me too

[ENH] Proposition for adni-to-bids converter FMAP renaming

Logic could be greatly simplified if we decided to only support case 1 and case 2 from BIDS. Since Case 3 does not seem to be represented in ADNI.

[ENH] Proposition for adni-to-bids converter FMAP renaming

Thanks @NicolasGensollen for the comments ! I have added some unit tests, do you mind looking at them ?

[ENH] Proposition for adni-to-bids converter FMAP renaming

Thanks for the review @NicolasGensollen ! I modified the tests according to your suggestions. Do you see anything else ?

[BUG] In adni-to-bids, empty sessions files are not cleaned up

@NicolasGensollen Definitely not in the incoming days ! I want to finish the documentation first I think

Inefficient Handling of Images with "Bad" Suffixes

Hello, Thanks for reporting ! To convert dicom to nifti files, the ADNI-to-BIDS converter uses dcm2niix which is an external package and is responsible for the generation of these suffixes....

Noisy and useless summary when specifying a list of subjects manually

Still the case for ADNI and OASIS datasets since both use `create_participants_df` from bids_utils. To discuss : - [ ] Should that list be straight up the diff between desired...

ADNI_to_BIDS utils : `load_clinical_csv`, hidden csv file matching, issue #1163

I would prefer changing the rglob regex to not consider hidden files at all (either check on beginning of string or different rglob match but I would need to check...

Issues when converting T1 MRI of the ADNI database.

Hi ! Thanks for reporting. I need a few more details to answer you properly : - What version of Clinica are you using ? - What subjects did you...

Issues when converting T1 MRI of the ADNI database.

Hi ! Thanks for the precisions, they were very helpful. What is happening is that the converter is selecting images ids based on the information it has in the clinical...