AliceJoubert
AliceJoubert
Hi, thanks for reporting this issue ! Could you tell me first what OS you use, as well as the version of python and of clinica you are currently running...
Thanks for precisions ! First I would use a new python environment with the latest release of clinica since we are now using python 3.10 and clinica 0.8.4 (the instructions...
Thank you very much @GabrieleLozupone for your contribution ! I would advise to follow your suggestion till we change the source code to fix this issue (soon, hopefully :crossed_fingers:).
Glad to hear the previous issue is resolved ! When you mean "the good name" do you mean "sub-ADNI031S4194_ses-M000_FLAIR_real.nii" ?
Are you still using your environment with python 3.9, clinica 0.7.5 ? ADNI-to-BIDS also require dcm2nix, do you know which version are you using ?
Sometimes dcm2niix produces images with the suffix "_real". They are not BIDS compliant so clinica removes them after they have been written by dcm2niix. I tried the same set-up as...
I personally did not plan to resolve it soon at it is not so urgent, and this PR touches parts of the converter that are not tested a lot. We...
Thanks for the review @NicolasGensollen ! Do you see anything else ?
Hello ! Thanks for reporting this to us. In order to help you as best as I can, could you tell me : your OS, the python version and the...
Hi, thanks for the clarification ! First, I would advise to use a new python environment with the latest clinica release since we are currently working with python 3.10 and...