AliceJoubert

Update the "Installation" documentation page

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Page : [https://github.com/aramis-lab/clinica/blob/dev/docs/Installation.md] Step : Preparing the Python environment When trying to install Miniconda for a MacBook M3 user the following command lines raise an error : `curl https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o...

Refactor of adni_fmap.py following issue #1174 . It mainly tackles the renaming of the files after using dcm2nix to convert the files. I chose the easy way _ie_ relying on...

[Converter] ADNI-to-BIDS does not take into account history of conversion when ran successively to the same folder

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While testing for PR #1119 , I found a small bug with the ADNI to BIDS converter. Trying to run successively different modalities and save them in the same folder...

[ENH] Proposition for adni-to-bids converter FMAP renaming

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Refactor of adni-to-bids FMAP modality renaming functionality to address part of issue #1174 It is based on the outputs of dcm2nix (https://github.com/rordenlab/dcm2niix/blob/master/FILENAMING.md) and what is expected in BIDS specifications (https://bids-specification.readthedocs.io/en/stable/modality-specific-files/magnetic-resonance-imaging-data.html#types-of-fieldmaps)....

[BUG] In adni-to-bids, empty sessions files are not cleaned up

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While working on PR #1188 I noticed that even if all images of a session are deleted for a modality the folder specific for the modality is still kept. As...

Add a function translating source/study ids to bids ids.

Resolves bug described in #1172 .

Small refactor of create_participants_df of bids_utils to simplify the code. It uses dataframe methods now. The corresponding unit test had to be adapted a little. The function is currently working...

TODO : write issue associated -> WP BIDS for converters Related to issue #1252 [BIDS spec](https://bids-specification.readthedocs.io/en/stable/modality-specific-files/positron-emission-tomography.html#time)

Closes #1294