AliceJoubert
AliceJoubert
Yes I think you should not put any description, since the key is not always straight "MPRAGE" :  You are going to download all the other images but at...
No worries, feel free to ask ! I cannot seem to reproduce this situation. Could you try to run the same command line with a `subjects_list` ? As described in...
Thanks for the files ! From what I can see : - Some subjects are actually not in ADNI metadata (ex : `WARNING:Subject with PTID 031_S_0773 does not exist. Please...
Thanks ! Clearly the converter cannot find the path to your raw images ; else in the .tsv you would have the actual path for the image in the column...
I downloaded this subject file with the same parameters you indicated before and I got this :  The image selected by clinica is in the `MPR_GradWarp_B1_Correction_N3_Scaled` folder, so if...
Well I would say it depends on what you are aiming for : all the visits, only the first... what do you need ? I had no issue getting folders...
To be fair I am a bit confused ; for 002_S_0413 specifically I get hundreds of folders id I do not restrict the ADNI phase and get only T1. Even...
Hi ! What do your logs tell you ? For subject 941_S_7106 for example it's due to missing clinical data so the subject will not be converted anyway, I described...
In the version of clinica you are using (0.8.4) at the beginning, the converter parses all subjects from clinical data for image paths regardless if they are in your raw...
> A non trivial example of where such a change would have consequences not captured by our tests (I think): > > https://github.com/aramis-lab/clinica/blob/d379ae6a87faefefe9413a002498e7ea6d5902e4/clinica/pipelines/anatomical/freesurfer/longitudinal/template/pipeline.py#L37-L40 Thanks for spotting that ! I can...