Adam Taranto
Adam Taranto
Update: The unwanted `/home/gitpod/.pyenv/shims` gets added back to the start of the PATH which I run `source $HOME/.bashrc` I can't see anything in obvious in`.bashrc` that would do this. @axonasif...
I second that. It would be super useful to have a tutorial on setting up nbgrader with a JupyterHub server. @moctarjallo, not sure if this will help with you specific...
The aim would be to reassemble the phased reads for each scaffold similar to [Garg et al. 2021](https://www.nature.com/articles/s41587-020-0711-0). We have HiFi data that would be used for variant calling and...
A phased VCF would do the trick! We have an allotetraploid genome with very little variation within sub-genomes so I can cluster the tracks and do the haplotag splitting in...
Hi @clemgoub, I'd like to use TE-Aid as a dependency of another bioconda project so it would be great to get @bricoletc 's recipe up. - First, you can [create...
Hi @clemgoub, thanks for the quick reply. Changes to the bioconda recipe can be made independently of the release here if you want to go ahead with that.
@clemgoub, sorry, would you mind removing that tag and release and re-doing it without the extra dot after the v? i.e. `v.1.0.0` --> `v1.0.0` It will confuse the pattern that...
Thanks. Bioconda recipe is good to go once the corrected release is up.
Cheers, submitted for review! Thanks @bricoletc
I guess you solved your minimap2 issue if you have generated output from teloclip-extract. Please try this example workflow. Make sure you have a stable release version for teloclip installed....