Adam Taranto
Adam Taranto
Hi @ctb, any chance you'd be able to build blast dbs for genbank fungi (and possibly bacteria and plants)? Our HPC folks have given us nt and nr but I...
Can you please post the full command you used and the `layout` file.
Thanks, can you also provide the first 10 lines of `seqids`
Please post your `layout` file and a sample of your `BED` and `blocks` file. As a side note, you may want to reverse the contig orientation for 3410 and its...
> But it shows me error that: > FileNotFoundError: [Errno 2] No such file or directory: '8' Correct, it is expecting the 8th column to be a bed file path....
The edges are numbered starting from zero in the same order as the contigs in the first section. To put contigs on the same line give them the same y...
Please post the exact command you used for the last two micro-synteny plots and provide any input files that were different between the two runs.
Please update previous post with the commands and layout file used to create the first two images.
I think the label placement is behaving as intended. They are being rotated in-place by the same number of degrees as for the contigs themselves. It would be difficult to...
Hi @ufaroooq, The main thing I would recommend is visually inspecting the retained overhangs before doing the final extension. Being too strict can throw out useful data and being too...