Adam Taranto
Adam Taranto
In this case I think your overhangs look pretty consistent with each other. I would try this: 1. For each scaffold select the longest overhang (lowercase segment) from the `teloclip-extract`...
Most of your scaffolds with at least 1 overhang detected by teloclip have a read depth of between 1-17X at the end of the scaffold. 10R and 11L have a...
The high coverage scaffold ends might also be mitochondrial and chloroplast genomes come to think of it. You should identify and exclude those scaffolds.
Include option to only output longest overhang per contig end.
There is a secondary tool packaged with teloclip called `teloclip-extract`, this tool will output all the overhangs for each end of each contig. The overhanging region of each read is...
# Test cases +/- strand alignments left o/h right o/h overhang both ends of contig No alignments match crunched homopolymers, inc revcomp Extract correct overhang region from CIGAR string
Updating pypi and bioconda releases to push fix to the 'rU' bug in #12 and #17
@multimeric I'm willing to help integrate this into some lessons to showcase the Slides app. I can have a crack at writing a action to automate slide generation after episode...
Hi Alex, thanks for clarifying. Would love to see All vs All as a feature in a future version :)
There is an experimental version of the micro synteny plotting module that allows for plotting alignment blocks from whole chromosome alignments distinct from the gene annotations.I haven’t implemented this for...