Adam Taranto
Adam Taranto
typo in the readme, fixed. `pip install git+https://github.com/tanghaibao/jcvi.git`
Looks like there is an issue with compiling Cython modules in your env. ``` # Delete your existing jcvi env # and delete any existing clone of the jcvi project...
Maybe similar to #489? Try running the command with `--notex` and let me know if that works.
Cool, I hadn't seen that module. Will leave this issue open to revisit later.
Hi @DougSweeney, I've implemented a flipping option for the `jcvi.graphics.ribbon` module and could migrate that into `jcvi.graphics.synteny` for the microsynteny plots easily enough. Would that be useful for what you...
@tanghaibao FYI https://github.com/tanghaibao/jcvi/blob/bd79635cd6d486d2c951d7bf6ac020806e2a2f17/src/jcvi/graphics/ribbon.py#L464-L469 Plus you need to add a field to the layout file to collect the length of each chromosome.
@1690834643 I am not sure where your `could not convert string to float` error is coming from. But you should check that the columns in your `blocks` file follow the...
In this example where you have two chrms next to each other (i.e. Second line with ZW and M26) those are actually separate tracks. You can use the x,y settings...
Please post your layout.txt file and the head of seqids.txt
Check that the BED files referred to in your layout file are formatted like [this example](https://github.com/tanghaibao/jcvi/blob/main/tests/graphics/data/grape.bed). They should be tab delimited with 7 cols.