Shifu Chen

This tool is originally designed for detecting fusion from DNA-Seq data. Theoretically it can be used for detecting fusion from short reads (Illumina / Lifetech etc) RNA-Seq data. But I...

I have updated the demo dataset, which contains a valid EML4-ALK fusion with ultra-high frequency. Please download it again from: http://opengene.org/dataset.html

Could you let me know how many lines do R1.fq and R2.fq have? They should be 15000000 lines for each file. For the second issue. Which genes do you want...

I have updated the demo dataset, which contains a valid EML4-ALK fusion with ultra-high frequency. Please download it again from: http://opengene.org/dataset.html

Typically 100bp is required. 150bp PE data is preferred.

https://github.com/OpenGene/GeneFuse/blob/master/src/indexer.cpp#L162

The result is printed on the terminal. *.pyc files are python files which you can ignore. predict_fig contains the fragmentation pattern figures of each fastq file.

What's the fusion partner gene of this TCF3 fusion? Please note that, GeneFuse only detects gene fusions that both two fusion genes are listed in the CSV file.

What genes do you want? I can create this CSV file for you.

Here you are. [erica.hg38.csv.zip](https://github.com/OpenGene/GeneFuse/files/2270641/erica.hg38.csv.zip)