Shifu Chen

Errors are saved to STDERR, not STDOUT. So you cannot find errors in the result file. Can you just run the command without redirecting to result?

You used `>`, which redirected STDOUT to the file you specified.

You didn't redirect STDERR, so it would be printed on terminal. You can use following command to also redirect STDERR: ./genefuse -r Homo_sapiens_assembly19.fasta -f druggable.hg19.csv -1 genefuse.R1.fq.gz -2 genefuse.R2.fq.gz -h...

Thanks, I will try to reproduce it.

genefuse hasn't been tested for nanopore data yet, so it may not work

Currently I have no time to make OpenGene adapt to Julia 1.0. But you can give me your gene list, then I can generate the fusion file for you.

You can paste or upload your gene list here, or send to me by email: [email protected]

Just sent u by email.

The primary transcript means the most widely used transcript, which mostly is the longest one.

OK