Shifu Chen

The output of gencore is sorted. If your output is unsorted, please check the version of your gencore, confirm that it is the latest version. If it's still unsorted. Upload...

@zhujiaqi2014 Hi man, @caleblareau may not understand Chinese. Better to reply in English :)

Thanks, I will fix that.

For liquid biopsy data, just add `-s 2` option to discard the fragments without any duplicate. This option will produce a very clean data for downstream analysis.

Remember to preprocess your FASTQ with fastp (https://github.com/OpenGene/fastp)

Which version of OpenGene did you use? The latest version should have fixed it.

Hi, @Blahah , thanks for your advice. I will be glad to contribute to BioJulia, but meanwhile I will keep updating OpenGene, because OpenGene will not only use Julia.

You're right, I will make a change. Thanks

Yes, this hamming_distance is generalized for comparing sequences with different length

Thanks for your suggestion, I will make the previous versions available.