webknossos-libs icon indicating copy to clipboard operation
webknossos-libs copied to clipboard

Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.

Results 187 webknossos-libs issues
Sort by recently updated
recently updated
newest added

## Context - I noticed some CI fails because of a JSONDecodeError: https://github.com/scalableminds/webknossos-libs/actions/runs/9698184867/job/26764161684 ## Expected Behavior - The generated properties json should always be generated correctly. ## Current Behavior -...

bug

I'm reading the APIs for Dataset and several methods take an argument called cls but the docs don't say what it is or what type(s) it is. It'd be good...

bug

### Description: - Rename "test_pickling" to "multiprocessing_with_pickling" and "debug_sequential" to "sequential_with_pickling". No longer use a multiprocessing pool of size 1 for "sequential" executor by replacing it with the former "debug_sequential"...

### Description: - Implements getters and setters for the new metadata field in remote datasets and folders. ### Issues: - fixes #1148 ### Todos: Make sure to delete unnecessary points...

### Description: This PR adds option to add remote mags and remote layer to an existing dataset via `dataset.add_remote_layer(layer / URL, layer_name` and `layer.add_remote_mag(mag / URL). When using `add_remote_mag` make...

enhancement
wklibs

### Description: If an annotation is merged with a compressed fallback layer, the bounding box of the `output_mag` needs to account for compressed shard writes outside the original bounding box...

### Description: - Adds a method to the Layer class that imports an existing zarr array into a Dataset by adding it as a mag. ### Issues: - fixes #1144...

I'ts possible that this feature already exists and I've not found it in the documentation. I'd like to programatically access the list of Annotations that are currently available to my...

enhancement

### Description: - Update the client to use webknossos API v8 ### Issues: - fixes #1178 ### Todos: Make sure to delete unnecessary points or to check all before merging:...

https://github.com/scalableminds/webknossos/pull/7386 changes the server-side API to v8 (organization_id instead of organization_name). The client should be adapted accordingly.

enhancement